| Summary |
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| Ep. 1. To Challenge the Sun |
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| Ep. 2. Body of the Sanctioned |
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| Ep. 3. Mother |
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| Ep. 4. A Forger's Love |
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| Ep. 5. Mechanical Arm |
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| Ep. 6. The Alchemy Exam |
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| Ep. 7. Night of the Chimera's Cry |
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| Ep. 8. The Philosopher's Stone |
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| Ep. 9. Be Thou for the People |
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| Ep. 10. The Phanton Thief |
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| Ep. 11. The Other Brothers Elric, Pt. 1 |
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| Ep. 12. The Other Brothers Elric, Pt. 2 |
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| Ep. 13. Flame Vs. Fullmetal |
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| Ep. 14. Destruction's Right Hand |
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| Ep. 15. The Ishbal Massacre |
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| Ep. 16. That Which Is Lost |
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| Ep. 17. House of the Waiting Family |
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| Ep. 18. Marcoh's Notes |
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| Ep. 19. The Truth Behind Truths |
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| Ep. 20. Soul of the Guardian |
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| Ep. 21. The Red Glow |
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| Ep. 22. Created Human |
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| Ep. 23. Fullmetal Heart |
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| Ep. 24. Bonding Memories |
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| Ep. 25. Words of Farewell |
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| Ep. 26. Her Reason |
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| Ep. 27. Teacher |
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| Ep. 28. All is One, One is All |
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| Ep. 29. The Untainted Child |
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| Ep. 30. Assault on South Headquarters |
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| Ep. 31. Sin |
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| Ep. 32. Dante of the Deep Forest |
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| Ep. 33. Al, Captured |
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| Ep. 34. Theory of Avarice |
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| Ep. 35. Reunion of the Fallen |
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| Ep. 36. The Sinner Within |
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| Ep. 37. Flame Alchemist, The Bachelor Lieutenant, and the Mystery of Warehouse 13 |
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| Ep. 38. With the River's Flow |
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| Ep. 39. Secret of Ishbal |
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| Ep. 40. The Scar |
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| Ep. 41. Holy Mother |
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| Ep. 42. His Name is Unknown |
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| Ep. 43. The Stray Dog |
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| Ep. 44. Hohenheim of Light |
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| Ep. 45. A Rotted Heart |
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| Ep. 46. Human Transmutation |
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| Ep. 47. Sealing the Homunculus |
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| Ep. 48. Goodbye |
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| Ep. 49. The Other Side of the Gate |
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| Ep. 50. Death |
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| Ep. 51. Laws and Promises |
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